● Amit G Deshwar. Automatically reconstructing subclonal composition and evolution from whole genome sequencing of bulk tumor samples.
● Layla Oesper. Quantifying Tumor Heterogeneity in Whole-Genome and Whole-Exome Sequencing Data.
● Nam-Phuong Nguyen. TIPP:Taxonomic Identification and Phylogenetic Profiling.
● Pall Melsted. KmerStream: Streaming algorithms for k-mer abundance estimation.
● Shoshana Marcus. SplitMEM: Graphical pan-genome analysis with suffix skips.
● James Holt. Merging of Multi-String BWTs with Applications.
● Rene Rahn. Journaled String Tree - A scalable data structure for analyzing. thousands of similar genomes on your laptop.
● Valentina Boeva. Multi-factor data normalization enables the detection of copy number aberrations in amplicon sequencing data
● Johannes Koster. Massively parallel read mapping on GPUs with PEANUT.
● Francisco De La Vega. An infrastructure to jointly leverage public and private genomic data in a co-located data/high-performance computing environment.
● Leon Kuchenbecker. Imseq and Imsim - A Software Toolkit for Immunogenetic Sequence Analysis.
● Bahar Behsaz. De novo Assembly of the North American Bullfrog Transcriptome with Trans-ABySS.
● John Beaulaurier. Single Molecule-level Characterization of Heterogeneity in Bacterial Methylomes.
● Raffaele Calogero. Chimera: a Bioconductor package for secondary analysis of fusion products.
● Justin Foong. Prioritizing Clinically Relevant Copy Number Variation from Genetic Interactions and Gene Function Data.
● Michael Forster. Herpes beware: eliminating false positive virus detections in NGS data resulting from alignment biases.
● Gregory Zynda. De novo TE annotation with TEAM: TE Annotation from Methylation.
● Wanding Zhou. ClinSeK: targeted clinical variant identification from high-throughput sequencing data.
● Michael Love. Multiple group comparisons for RNA-Seq and stable effect size estimates.
● Lasse Maretty, Bayesian transcriptome assembly.
● Lorena de La Fuente, Functional Alternative Splicing Analysis Using Long Read Technologies.
● Ilan Ben-Bassat. String graph construction using incremental hashing.
● Kathrin Trappe. Gustaf: Detecting and correctly classifying SVs in the NGS twilight zone.
● Ali Bashir. Resolving Complex Tandem Repeats with Long Reads.
● Anna Ritz. Characterization of Complex Structural Variants with Single Molecule and Hybrid Sequencing Approaches.
● Manuel Allhoff. Detecting differential peaks in ChIP-seq signals with ODIN.
● Leena Salmela. LoRDEC: accurate and efficient long read error correction.
● Vladimír Boža, Using Maximum Likelihood Model to Assemble Genomes.
● Jianzhu Ma. Bermuda: Bidirectional de novo assembly of transcripts with new insights for handling uneven coverage.
● Hamid Mohamadi. DIDA: Distributed Indexing Dispatched Alignment.
